Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11720505_11720840_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11720505 - 11720840

Intron Length:

336

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATACAAT

5'SS Class:

major

3'SS Sequence:

TTTTCCTCCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTTTCCTCCAAA

Flanking Amino Acid:

NKDRLSDSTTGADSLLDVSS

Intron Amino Acid Position:

292

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

37.8

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

73.9

0.54

75.2

27.4

Minor 5ss

46.5

-0.4

2.8

65.5

45.8

Minor BPS

57.1

0.22

2.1

77.18

39.5

Associated Gene:

Gene:

RAI14

Ensembl Gene ID:

ENSAPLG00000006444

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019039

11714084 - 11788824

74741

ENSAPLT00000006694

11714084 - 11777002

62919