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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11749913_11788732_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11749913 - 11788732
Intron Length:
38820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTACTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCTTCTTTTACT
Flanking Amino Acid:
SLKAKFRKSDTNEWNKNDDR
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
81.5
0.71
0.8
74.7
34.9
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
74.3
0.85
1.5
87.77
37.8

Associated Gene:

Gene:
RAI14
Ensembl Gene ID:
ENSAPLG00000006444
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019039
11714084 - 11788824
74741