Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11862966_11867986_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11862966 - 11867986

Intron Length:

5021

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTCTGA

5'SS Class:

major

3'SS Sequence:

TTTGTGTACTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

AGTTATTTAAAA

Flanking Amino Acid:

VELTTSDRVQPPQTGPQNPD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.1

58.9

42.7

Major BPS

81.6

0.78

0.8

24.9

Major PPT

71.2

0.48

0.9

70.2

40.4

Minor 5ss

42.2

-0.9

3.1

56.9

47.2

Minor BPS

60.4

0.32

1.6

69.16

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006362

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006597

11862678 - 11877268

14591