About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11897166_11905882_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11897166 - 11905882
Intron Length:
8717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTAGCTTTGATC
Flanking Amino Acid:
EPQFYEQLLKGLGLDSDKLP
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
76.2
39.9
Major BPS
84
0.85
0.9
75
39.9
Major PPT
90
0.9
0.6
88.2
21.5
Minor 5ss
35.6
-1.6
2.7
37.6
40
Minor BPS
63.5
0.41
1.3
69.63
36.5

Associated Gene:

Gene:
AMACR
Ensembl Gene ID:
ENSAPLG00000030697
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031947
11886767 - 11906403
19637