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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_118976_121134_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118976 - 121134
Intron Length:
2159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGACT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAAAAATTAATC
Flanking Amino Acid:
AYFLFLLILQLIPQISSLAW
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
36.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.9
0.81
0.7
80.2
25.3
Minor 5ss
41
-1
3.1
58.1
46.3
Minor BPS
49.1
-0
1.8
60.13
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002472
93540 - 123944
30405