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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11918092_11919049_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11918092 - 11919049
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
CTAGTCTCAGCA
Flanking Amino Acid:
INAISSSVYSYLQKILLQYI
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
87.1
0.84
0.7
80.8
31.2
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
46.2
-0.2
1.8
55.78
43.4

Associated Gene:

Gene:
SLC45A2
Ensembl Gene ID:
ENSAPLG00000003346
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003408
11908420 - 11923322
14903