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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11952250_12014924_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11952250 - 12014924
Intron Length:
62675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATGCTTATTT
Flanking Amino Acid:
TAAISTCSGLTGYFQLPHGD
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.7
0.76
0.8
81.1
35.6
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
59.9
0.39
2
80.58
41.6

Associated Gene:

Gene:
ADAMTS12
Ensembl Gene ID:
ENSAPLG00000002467
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027015
11945758 - 12116274
170517
ENSAPLT00000002531
11945758 - 12116274
170517