Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12048001_12050142_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12048001 - 12050142

Intron Length:

2142

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGACAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTAAATTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTTTTTAAAT

Flanking Amino Acid:

MHHDVAVLLTRKDICAGMNR

Intron Amino Acid Position:

488

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

64.3

41.7

Major BPS

90.4

0.7

90.2

19.3

Major PPT

76.6

0.6

0.9

68.1

42.1

Minor 5ss

37.4

-1.4

46.9

48.4

Minor BPS

79.5

1.2

92.62

Associated Gene:

Gene:

ADAMTS12

Ensembl Gene ID:

ENSAPLG00000002467

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027015

11945758 - 12116274

170517

ENSAPLT00000002531

11945758 - 12116274

170517