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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12107708_12109784_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12107708 - 12109784
Intron Length:
2077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTTGTTTACAG
Flanking Amino Acid:
ASWKTGNWSKCSANCSGGFK
Intron Amino Acid Position:
1423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
86
0.81
0.8
79.9
37.7
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
49.1
-0.2
2.2
63.96
44.2

Associated Gene:

Gene:
ADAMTS12
Ensembl Gene ID:
ENSAPLG00000002467
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027015
11945758 - 12116274
170517
ENSAPLT00000002531
11945758 - 12116274
170517