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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1213408_1299014_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1213408 - 1299014
Intron Length:
85607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TGTGGGACCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CTGCCCTGACCA
Flanking Amino Acid:
LSPNLRKMPKEKKCLGCLLS
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
49.3
-0
1.1
45.2
40.6
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
49.8
-0
1.8
61.56
44.3

Associated Gene:

Gene:
DNAI1
Ensembl Gene ID:
ENSAPLG00000002669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030587
1212321 - 1411437
199117