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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12142121_12142861_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12142121 - 12142861
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGTAT
5'SS Class:
major
3'SS Sequence:
ACTTTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAATACTT
Flanking Amino Acid:
GPMCDEYAQKVRQQFHDAGL
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
74.1
32
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.7
0.6
0.8
70
35.9
Minor 5ss
32.3
-2
3.4
45.9
49.3
Minor BPS
46.4
-0.2
2.2
75.27
41.2

Associated Gene:

Gene:
TARS1
Ensembl Gene ID:
ENSAPLG00000016069
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016816
12140530 - 12154296
13767