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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12148573_12148996_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12148573 - 12148996
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATACA
5'SS Class:
major
3'SS Sequence:
CTTTCTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTATTCAAGT
Flanking Amino Acid:
ALKPMNCPGHCLMFDHRPRS
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
75.7
33.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
87.4
0.84
0.6
85.2
22.3
Minor 5ss
35.5
-1.6
2.7
40.3
40.5
Minor BPS
51
0.11
2
74.44
42.2

Associated Gene:

Gene:
TARS1
Ensembl Gene ID:
ENSAPLG00000016069
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016816
12140530 - 12154296
13767