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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12150588_12151173_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12150588 - 12151173
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTCATTTACT
Flanking Amino Acid:
GKIKTIKIHKNSSTYWEGKA
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
82.8
0.74
0.9
78
35.5
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
67.7
0.64
1.9
88.15
36.2

Associated Gene:

Gene:
TARS1
Ensembl Gene ID:
ENSAPLG00000016069
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016816
12140530 - 12154296
13767