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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12151399_12152245_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12151399 - 12152245
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
AAGGAGTTAACA
Flanking Amino Acid:
KKETLLEMFKYNKFKCRILN
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
92.7
0.96
0.6
92.4
17.8
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
45.6
-0.3
2.2
55.77
43

Associated Gene:

Gene:
TARS1
Ensembl Gene ID:
ENSAPLG00000016069
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016816
12140530 - 12154296
13767