About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12152364_12152587_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12152364 - 12152587
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
GTGTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTGTGTTTATTT
Flanking Amino Acid:
GFYYDMFLEEGGVSSNDFSA
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.8
38.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.7
0.6
0.9
74.7
40
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
49.1
0.01
2
67.82
43.9

Associated Gene:

Gene:
TARS1
Ensembl Gene ID:
ENSAPLG00000016069
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016816
12140530 - 12154296
13767