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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12175389_12180517_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12175389 - 12180517
Intron Length:
5129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TGTTCCTTATCT
Flanking Amino Acid:
VVRALQAGERVVIMCASGDT
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
80.8
0.69
0.8
75
34.7
Minor 5ss
28.5
-2.5
3.1
31.8
42.6
Minor BPS
79.7
1.01
1.5
93.06
35.2

Associated Gene:

Gene:
NPR3
Ensembl Gene ID:
ENSAPLG00000023703
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042174
12173681 - 12216741
43061