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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12180641_12185394_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12180641 - 12185394
Intron Length:
4754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTCACTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
NIELFNSSSYGNGSWRRGDK
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.1
36.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.5
0.71
0.8
82.3
28.5
Minor 5ss
42.9
-0.8
3.4
61.4
45.4
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
NPR3
Ensembl Gene ID:
ENSAPLG00000023703
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042174
12173681 - 12216741
43061