About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12211349_12213869_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12211349 - 12213869
Intron Length:
2521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GATTTCTCACTC
Flanking Amino Acid:
AGLLMAFYFFRKKYRITIER
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
72.7
38.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.3
0.7
0.8
77
30.6
Minor 5ss
30.9
-2.2
2.6
34.6
40.9
Minor BPS
49.1
-0
1.8
60.11
39.2

Associated Gene:

Gene:
NPR3
Ensembl Gene ID:
ENSAPLG00000023703
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042174
12173681 - 12216741
43061