Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1223323_1223461_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1223323 - 1223461

Intron Length:

139

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGCGCCC

5'SS Class:

major

3'SS Sequence:

TTCCTTCCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

ATATTGGTATTT

Flanking Amino Acid:

FPMNIKVSNRDDRQETALNL

Intron Amino Acid Position:

274

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.1

0.33

1.3

55.8

40.2

Major BPS

79.7

0.74

79.6

35.6

Major PPT

80.4

0.68

0.7

73.1

31.8

Minor 5ss

36.2

-1.6

3.5

51.2

45.5

Minor BPS

40.3

-0.6

2.6

62.07

42.7

Associated Gene:

Gene:

ARID3C

Ensembl Gene ID:

ENSAPLG00000007857

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026768

1219192 - 1225850

6659

ENSAPLT00000008146

1211779 - 1224202

12424