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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1228318_1228983_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1228318 - 1228983
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCAT
5'SS Class:
major
3'SS Sequence:
TCTCCCTGGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTCCTGATGT
Flanking Amino Acid:
DTMKQQFILAEEQVIPYRAD
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63.1
42.9
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
68.7
0.42
1
68.8
37.1
Minor 5ss
30.7
-2.2
3.6
46.8
48.5
Minor BPS
60.5
0.41
2
84.91
41.5

Associated Gene:

Gene:
DCTN3
Ensembl Gene ID:
ENSAPLG00000005990
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006204
1226993 - 1230585
3593