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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1230063_1230495_F

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
1230063 - 1230495
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
GAGCATTGTCCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CTTTCCTTAAGA
Flanking Amino Acid:
KALLEDYNKTTLLLSKQFVQ
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.9
-0
1.2
50.8
41.3
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
60.5
0.24
1.1
50.3
47.5
Minor 5ss
92.7
1.44
0.8
90
21.2
Minor BPS
77.1
0.85
1.6
83.03
38.2

Associated Gene:

Gene:
DCTN3
Ensembl Gene ID:
ENSAPLG00000005990
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006204
1226993 - 1230585
3593