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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12384453_12412196_R

Intron Information:

Intron Rank:
135782
Intron Class:
major
Intron Phase:
Intron Coordinates:
12384453 - 12412196
Intron Length:
27744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAC
U12 Branch Point Sequence:
TTTCTTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.8
39.2
Major BPS
63.6
0.34
1.2
55.4
41.7
Major PPT
85.5
0.8
0.9
83.5
31.6
Minor 5ss
34.7
-1.7
3.2
46.8
42.3
Minor BPS
71.5
0.67
1.1
79.17
30

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020438
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024340
12369054 - 12412353
43300