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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12393944_12412196_R

Intron Information:

Intron Rank:
135784
Intron Class:
major
Intron Phase:
Intron Coordinates:
12393944 - 12412196
Intron Length:
18253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TATTTCTCAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.8
39.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
34.7
-1.7
3.2
46.8
42.3
Minor BPS
62.4
0.47
1.8
81.1
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020438
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027741
12392278 - 12412395
20118