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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12420002_12428967_R

Intron Information:

Intron Rank:
137033
Intron Class:
major
Intron Phase:
Intron Coordinates:
12420002 - 12428967
Intron Length:
8966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTCC
5'SS Class:
major
3'SS Sequence:
TTTCACCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATTTTTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.5
39.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.7
0.58
0.9
69.9
36.2
Minor 5ss
37
-1.5
3.4
51.5
45.2
Minor BPS
63.8
0.42
1.7
74.61
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021223
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036423
12419245 - 12429251
10007
ENSAPLT00000017462
12414471 - 12429097
14627