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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12420002_12461304_R

Intron Information:

Intron Rank:
137037
Intron Class:
major
Intron Phase:
Intron Coordinates:
12420002 - 12461304
Intron Length:
41303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCACCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATTTTTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.7
0.58
0.9
69.9
36.2
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
63.8
0.42
1.7
74.61
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021223
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039907
12419245 - 12461489
42245