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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12469998_12472488_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12469998 - 12472488
Intron Length:
2491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGTTC
5'SS Class:
weak_major
3'SS Sequence:
TTAATTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATT
Flanking Amino Acid:
QEGEMKPGRKGISLNPEQWN
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.2
66.5
40
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.9
0.7
0.9
78.3
39.5
Minor 5ss
60.3
0.35
2.7
76
40.1
Minor BPS
78.1
0.96
1
86.75
33.6

Associated Gene:

Gene:
SUB1
Ensembl Gene ID:
ENSAPLG00000023079
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033369
12469665 - 12480646
10982