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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12491402_12491543_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
12491402 - 12491543
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTGCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACAGAT
U12 Branch Point Sequence:
AGTTGGGTGACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
83.8
34.5
Major BPS
49.4
-0
1.2
46.7
38.9
Major PPT
79.1
0.66
0.9
76
32.5
Minor 5ss
42.6
-0.8
3.1
63.9
40.4
Minor BPS
39.8
-0.8
2.8
56.95
42.6

Associated Gene:

Gene:
ZFR
Ensembl Gene ID:
ENSAPLG00000015627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045485
12491266 - 12540367
49102