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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12505915_12508560_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12505915 - 12508560
Intron Length:
2646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTTTA
5'SS Class:
major
3'SS Sequence:
TTCTCCCATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTATTTACTT
Flanking Amino Acid:
IQKTVSQQPASGVAY
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
75
38.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75
0.56
0.8
70.6
29.3
Minor 5ss
47.9
-0.2
2.9
66.7
44.7
Minor BPS
54.5
0.22
1.7
72.28
38.9

Associated Gene:

Gene:
ZFR
Ensembl Gene ID:
ENSAPLG00000015627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016314
12505898 - 12534308
28411