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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12511475_12512257_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12511475 - 12512257
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATATTT
Flanking Amino Acid:
PSVAESYYQTAPKAGYSQGA
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
69.2
38.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
79.4
0.66
0.8
78.8
33.8
Minor 5ss
33.7
-1.9
3.1
43.4
44.3
Minor BPS
61.5
0.44
1.8
84.57
36.4

Associated Gene:

Gene:
ZFR
Ensembl Gene ID:
ENSAPLG00000015627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043847
12491544 - 12540367
48824
ENSAPLT00000016314
12505898 - 12534308
28411
ENSAPLT00000016178
12491544 - 12539316
47773
ENSAPLT00000045485
12491266 - 12540367
49102