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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12512477_12513761_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12512477 - 12513761
Intron Length:
1285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGATCTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
TYSTTAVTYSGTSYSGYEAA
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
62.5
0.28
1.7
73.8
41.4
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
ZFR
Ensembl Gene ID:
ENSAPLG00000015627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045485
12491266 - 12540367
49102
ENSAPLT00000043847
12491544 - 12540367
48824
ENSAPLT00000016314
12505898 - 12534308
28411
ENSAPLT00000016178
12491544 - 12539316
47773