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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12514010_12517299_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12514010 - 12517299
Intron Length:
3290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGTG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
VCKISCAGPQVVKLHTKLGK
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
67.3
44.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.2
0.86
0.7
84.3
30.6
Minor 5ss
40.8
-1
3.4
57.9
46.7
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
ZFR
Ensembl Gene ID:
ENSAPLG00000015627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016178
12491544 - 12539316
47773