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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12515202_12517299_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12515202 - 12517299
Intron Length:
2098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCTTTATTT
Flanking Amino Acid:
AHIRGAKHQKVVKLHTKLGK
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.3
32.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.2
0.86
0.7
84.3
30.6
Minor 5ss
34.8
-1.7
3.5
49.1
41
Minor BPS
69.4
0.69
1.5
83.14
39

Associated Gene:

Gene:
ZFR
Ensembl Gene ID:
ENSAPLG00000015627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045485
12491266 - 12540367
49102
ENSAPLT00000043847
12491544 - 12540367
48824
ENSAPLT00000016314
12505898 - 12534308
28411