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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12518664_12519170_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12518664 - 12519170
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGATA
5'SS Class:
major
3'SS Sequence:
CTTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TAAACTTTATTT
Flanking Amino Acid:
QPVGHDYVEEVRNDEGKVIR
Intron Amino Acid Position:
689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
73.3
37.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
88.3
0.86
0.7
80.5
36.7
Minor 5ss
42
-0.9
3.1
57.3
47
Minor BPS
56.6
0.29
1.6
70.74
40.4

Associated Gene:

Gene:
ZFR
Ensembl Gene ID:
ENSAPLG00000015627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016178
12491544 - 12539316
47773
ENSAPLT00000045485
12491266 - 12540367
49102
ENSAPLT00000043847
12491544 - 12540367
48824
ENSAPLT00000016314
12505898 - 12534308
28411