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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12520382_12520743_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12520382 - 12520743
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
TGATGCCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
AATTCTTTGATG
Flanking Amino Acid:
EEEERWRMEMRRYEEDMYWR
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
71.7
0.49
0.9
66.9
40.3
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
66.5
0.38
1.3
65.16
36.9

Associated Gene:

Gene:
ZFR
Ensembl Gene ID:
ENSAPLG00000015627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043847
12491544 - 12540367
48824
ENSAPLT00000016314
12505898 - 12534308
28411
ENSAPLT00000016178
12491544 - 12539316
47773
ENSAPLT00000045485
12491266 - 12540367
49102