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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12520907_12522440_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12520907 - 12522440
Intron Length:
1534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTCTCTGTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
CATTTCAGAAAT
Flanking Amino Acid:
GMPPQPQGPAPVRRPDSSDD
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
73.5
33.2
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
81.3
0.7
0.8
81.3
30.7
Minor 5ss
41.2
-1
3
59
45.5
Minor BPS
48.4
-0
1.8
68.27
41.9

Associated Gene:

Gene:
ZFR
Ensembl Gene ID:
ENSAPLG00000015627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043847
12491544 - 12540367
48824
ENSAPLT00000016314
12505898 - 12534308
28411
ENSAPLT00000016178
12491544 - 12539316
47773
ENSAPLT00000045485
12491266 - 12540367
49102