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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12522647_12522902_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12522647 - 12522902
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
ATTTACTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTACTTCACA
Flanking Amino Acid:
GDDKKDGSKDRALKGVLRVG
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.4
0.66
0.9
73
36.4
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
64.5
0.45
1.9
78.96
37.1

Associated Gene:

Gene:
ZFR
Ensembl Gene ID:
ENSAPLG00000015627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016178
12491544 - 12539316
47773
ENSAPLT00000045485
12491266 - 12540367
49102
ENSAPLT00000043847
12491544 - 12540367
48824
ENSAPLT00000016314
12505898 - 12534308
28411