About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12524592_12533384_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12524592 - 12533384
Intron Length:
8793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGGAAG
5'SS Class:
major
3'SS Sequence:
CAATCCATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
ATTTTGCCAATT
Flanking Amino Acid:
VVREENMRDGDVTSGMVKDP
Intron Amino Acid Position:
998

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
61.6
44.4
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
67.2
0.39
0.9
63.5
37.5
Minor 5ss
26.6
-2.7
3
30.4
43.1
Minor BPS
44.8
-0.3
2.4
70.84
40.5

Associated Gene:

Gene:
ZFR
Ensembl Gene ID:
ENSAPLG00000015627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045485
12491266 - 12540367
49102
ENSAPLT00000043847
12491544 - 12540367
48824
ENSAPLT00000016178
12491544 - 12539316
47773