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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12538557_12539136_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12538557 - 12539136
Intron Length:
580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TCTAACTGAAAT
Flanking Amino Acid:
QREDITSSAQFALRLLAFRQ
Intron Amino Acid Position:
1133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.6
0.67
0.7
76.2
25.7
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
51.9
0.14
1.8
72.47
43.4

Associated Gene:

Gene:
ZFR
Ensembl Gene ID:
ENSAPLG00000015627
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045485
12491266 - 12540367
49102
ENSAPLT00000043847
12491544 - 12540367
48824
ENSAPLT00000016178
12491544 - 12539316
47773