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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12560039_12561183_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12560039 - 12561183
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTATTTCAACT
Flanking Amino Acid:
PGELLLCEAST
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
38.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
47.5
-0.2
2.6
67.8
43
Minor BPS
62.3
0.46
1.5
79.03
36.9

Associated Gene:

Gene:
MTMR12
Ensembl Gene ID:
ENSAPLG00000013094
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045342
12560035 - 12583652
23618
ENSAPLT00000013664
12560035 - 12583652
23618