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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12563192_12565517_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12563192 - 12565517
Intron Length:
2326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTAATTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTACTTAATT
Flanking Amino Acid:
TLQCVDQIYGVYDEKKKLLT
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.8
43.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.5
0.66
0.8
77.3
36.6
Minor 5ss
32.2
-2
3.1
40
46.1
Minor BPS
79.6
1.01
1.3
91.68
30.7

Associated Gene:

Gene:
MTMR12
Ensembl Gene ID:
ENSAPLG00000013094
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045342
12560035 - 12583652
23618
ENSAPLT00000024728
12559971 - 12583652
23682
ENSAPLT00000013664
12560035 - 12583652
23618