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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12565649_12566274_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12565649 - 12566274
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
GGTCCTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGGGTGTTAATT
Flanking Amino Acid:
RFTKEEEVKRIVSGIIHHSQ
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
69.8
0.45
0.9
61.5
40
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
49
0.01
2.1
67.42
44.2

Associated Gene:

Gene:
MTMR12
Ensembl Gene ID:
ENSAPLG00000013094
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045342
12560035 - 12583652
23618
ENSAPLT00000024728
12559971 - 12583652
23682
ENSAPLT00000013664
12560035 - 12583652
23618