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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12566369_12568478_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
12566369 - 12568478
Intron Length:
2110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
AGAAACCAAACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGATGTCTAACA
Flanking Amino Acid:
SYASAAPNNTVMFDTLEDWR
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
48.4
-0
1.1
37.5
38.9
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
49.5
-0
2.1
65.69
40.5

Associated Gene:

Gene:
MTMR12
Ensembl Gene ID:
ENSAPLG00000013094
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024728
12559971 - 12583652
23682