Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12571065_12573269_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12571065 - 12573269

Intron Length:

2205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTCAGTAAT

5'SS Class:

major

3'SS Sequence:

TGATTTGATCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

AAAGCTTTAATT

Flanking Amino Acid:

TAQMQKAFLDGIYKTISKPP

Intron Amino Acid Position:

250

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.3

77.9

38.6

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

66.6

0.37

59.1

46.2

Minor 5ss

32.4

-2

2.7

40.8

Minor BPS

64.7

0.54

1.3

72.19

Associated Gene:

Gene:

MTMR12

Ensembl Gene ID:

ENSAPLG00000013094

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045342

12560035 - 12583652

23618

ENSAPLT00000024728

12559971 - 12583652

23682

ENSAPLT00000013664

12560035 - 12583652

23618