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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12580101_12580817_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12580101 - 12580817
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACTTTCTGAAAC
Flanking Amino Acid:
NHLHQSDKEEAPVFLLLLDC
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.8
0.83
0.7
85.8
28.4
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
59.1
0.27
1.5
66.67
38.5

Associated Gene:

Gene:
MTMR12
Ensembl Gene ID:
ENSAPLG00000013094
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045342
12560035 - 12583652
23618
ENSAPLT00000024728
12559971 - 12583652
23682
ENSAPLT00000013664
12560035 - 12583652
23618