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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12625026_12630959_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12625026 - 12630959
Intron Length:
5934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CATTCTGTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
ACTATGTGAAAA
Flanking Amino Acid:
MRRKSLLTRKVICKSDAPTG
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
66.7
0.41
1
57.8
39
Major PPT
75.4
0.57
0.9
72.7
37.2
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
42.4
-0.5
2.1
52.23
39.4

Associated Gene:

Gene:
GOLPH3
Ensembl Gene ID:
ENSAPLG00000024212
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017847
12602982 - 12635570
32589