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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12699380_12722545_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
12699380 - 12722545
Intron Length:
23166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTTGCCT
5'SS Class:
weak_major
3'SS Sequence:
TTTCCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GCACTCCTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.7
0.14
1.3
52.4
44.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
86.8
0.83
0.7
81.2
23.8
Minor 5ss
35
-1.7
3.2
49.4
46.3
Minor BPS
49.9
-0
1.7
58.11
40.1

Associated Gene:

Gene:
PDZD2
Ensembl Gene ID:
ENSAPLG00000012765
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043159
12698817 - 12856516
157700