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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12723350_12791912_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12723350 - 12791912
Intron Length:
68563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
GTGTCACTAATC
Flanking Amino Acid:
LMVGVDVTGASYLAEQCWNG
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
86
0.81
0.7
80.5
24.8
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
51.2
0.02
1.9
65.3
40.1

Associated Gene:

Gene:
PDZD2
Ensembl Gene ID:
ENSAPLG00000012765
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018360
12706722 - 12856516
149795
ENSAPLT00000045519
12715491 - 12856516
141026
ENSAPLT00000043159
12698817 - 12856516
157700
ENSAPLT00000034791
12722546 - 12858448
135903
ENSAPLT00000025228
12722546 - 12858448
135903
ENSAPLT00000047448
12706722 - 12856516
149795