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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12744956_12791912_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12744956 - 12791912
Intron Length:
46957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGAAG
5'SS Class:
major
3'SS Sequence:
CCTTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
GTGTCACTAATC
Flanking Amino Acid:
PPRRQQRLGGSYLAEQCWNG
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
67.5
39
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
86
0.81
0.7
80.5
24.8
Minor 5ss
26.2
-2.7
2.9
30.2
43.1
Minor BPS
51.2
0.02
1.9
65.3
40.1

Associated Gene:

Gene:
PDZD2
Ensembl Gene ID:
ENSAPLG00000012765
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028669
12744380 - 12858448
114069