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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1274741_1299014_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1274741 - 1299014
Intron Length:
24274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCTCACAGCT
Flanking Amino Acid:
LSPNLRKMPKEKKGQVVKKG
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
72.7
0.56
1
75
30.1
Major PPT
75.9
0.58
0.8
68.9
31.6
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
45.1
-0.2
2
66.5
43.8

Associated Gene:

Gene:
DNAI1
Ensembl Gene ID:
ENSAPLG00000002669
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002728
1274636 - 1411437
136802