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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_12792316_12804878_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12792316 - 12804878
Intron Length:
12563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
AATTCAAGGACT
Flanking Amino Acid:
VPDIGDQPAQREGCRIWKMH
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
82.8
0.74
0.8
80.8
30.8
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
46.9
-0.1
2
70.02
39.9

Associated Gene:

Gene:
PDZD2
Ensembl Gene ID:
ENSAPLG00000012765
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025228
12722546 - 12858448
135903
ENSAPLT00000045519
12715491 - 12856516
141026
ENSAPLT00000018563
12786221 - 12856516
70296
ENSAPLT00000043159
12698817 - 12856516
157700
ENSAPLT00000018360
12706722 - 12856516
149795
ENSAPLT00000036750
12744380 - 12856516
112137
ENSAPLT00000013295
12768614 - 12856516
87903
ENSAPLT00000028669
12744380 - 12858448
114069
ENSAPLT00000047448
12706722 - 12856516
149795